Tag: bioinformatics

Docker for a one shot CLI application

Since I first knew of Docker, I thought it might be the solution for several problems we are usually facing at the lab. I work as a Data Analyst for a small Biology research group. I am using Snakemake for defining the -usually big and quite complex- workflows for our analyses. From Snakemake, I usually […]

Dockerfile failed because of E: Version x for y was not found

I wrote the following Dockerfile: FROM ubuntu:14.04 MAINTAINER X # Setup OS RUN apt-get update -y && apt-get upgrade -y RUN apt-get -y install python-software-properties RUN apt-get -y install software-properties-common RUN add-apt-repository ppa:nebc/bio-linux RUN apt-get update RUN apt-get install -y wget RUN apt-get install -y python-setuptools python-docutils python-pip #RUN pip install snakemake RUN apt-get install […]

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